PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc11g005920.1.1

Common Name

LOC101248635

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 688aa MW: 76250.6 Da PI: 4.6348

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc11g005920.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	154.1	6.4e-48	4	131	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtd el+++yLk+k++gkkl++ e i+e++iyk+ PwdLp k ++k+++ ewyfF++r++kya+g r nrat++gyWk+tgkd Solyc11g005920.1.1 4 LPPGFRFHPTDVELIMYYLKRKITGKKLHF-EGITELNIYKFSPWDLPdKcCYKSKDLEWYFFCPRERKYASGARMNRATDTGYWKTTGKD 93 79************************99.78***********6545666777***************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v+ ++ vg ktLvf+ g+ p+g++tdWv+hey++ Solyc11g005920.1.1 94 RPVTY-CEKIVGSVKTLVFHLGHPPRGKRTDWVIHEYKF 131 *.999**************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.5E-57	2	154	IPR003441	NAC domain
PROSITE profile	PS51005	54.291	4	154	IPR003441	NAC domain
Pfam	PF02365	3.2E-24	5	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 688 aa Download sequence Send to blast
MARLPPGFRF HPTDVELIMY YLKRKITGKK LHFEGITELN IYKFSPWDLP DKCCYKSKDL 60 EWYFFCPRER KYASGARMNR ATDTGYWKTT GKDRPVTYCE KIVGSVKTLV FHLGHPPRGK 120 RTDWVIHEYK FEDKESIDAG FAQDSYVLCK VFQKSGPGPK NGAQYGAPFK EEDWEDDKIP 180 AEPCTSDVFP APPGRTDKPS GSNAIRMVDP RSTSDWTSSE QSPSPIQPSV QKLPLDEPDD 240 EELPGEPNLS NVSSINWRPS DQLKAKPSNT FSALPILPEE QSCSVDTGLV NPGPGPSNAQ 300 MCTNEMALDD IDDEMIGLFA PFTEDTSLLS GGSEPNQKLD NFHQEVNAPP AACTDGNDIF 360 DGLGDIEFWA GVGQLEPDLT ASGGANHSLN PVILPQEAPQ DAAYMELNDL DIPLNHPAET 420 IGTGQLVPGY FCTPYNSNNG MQQLCFGSNS LGIVQDFGEH HLPALPESYT QQVNHPDMAY 480 NFLNNPNQGY NAATNFSVSS YKQPEDRRLD TQNLERGVQQ QKFYLSIFAL CDGSFLLVKA 540 EVTLGVDGCT NDALSVILGE QRKLYLSIFA FCGGPFILVK AEVTLGVDGC TNDALSVILG 600 NPSFTSTRVS NVDKADFSKK THEAFCFGFS LAFIRFSCVG MLWLNSLWEL YQFIVFKILL 660 NQVQFNSSGT SFHLHFHLSY IANYAVL*

Sequence ? help Back to Top

Protein Sequence Length: 688 aa Download sequence Send to blast

MARLPPGFRF HPTDVELIMY YLKRKITGKK LHFEGITELN IYKFSPWDLP DKCCYKSKDL  60
EWYFFCPRER KYASGARMNR ATDTGYWKTT GKDRPVTYCE KIVGSVKTLV FHLGHPPRGK  120
RTDWVIHEYK FEDKESIDAG FAQDSYVLCK VFQKSGPGPK NGAQYGAPFK EEDWEDDKIP  180
AEPCTSDVFP APPGRTDKPS GSNAIRMVDP RSTSDWTSSE QSPSPIQPSV QKLPLDEPDD  240
EELPGEPNLS NVSSINWRPS DQLKAKPSNT FSALPILPEE QSCSVDTGLV NPGPGPSNAQ  300
MCTNEMALDD IDDEMIGLFA PFTEDTSLLS GGSEPNQKLD NFHQEVNAPP AACTDGNDIF  360
DGLGDIEFWA GVGQLEPDLT ASGGANHSLN PVILPQEAPQ DAAYMELNDL DIPLNHPAET  420
IGTGQLVPGY FCTPYNSNNG MQQLCFGSNS LGIVQDFGEH HLPALPESYT QQVNHPDMAY  480
NFLNNPNQGY NAATNFSVSS YKQPEDRRLD TQNLERGVQQ QKFYLSIFAL CDGSFLLVKA  540
EVTLGVDGCT NDALSVILGE QRKLYLSIFA FCGGPFILVK AEVTLGVDGC TNDALSVILG  600
NPSFTSTRVS NVDKADFSKK THEAFCFGFS LAFIRFSCVG MLWLNSLWEL YQFIVFKILL  660
NQVQFNSSGT SFHLHFHLSY IANYAVL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-45	4	154	15	168	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.4598	0.0	cell culture\| flower\| fruit\| leaf\| root\| stem

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013683	0.0	Lycopersicon esculentum clone 132505F, mRNA sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010312481.1	0.0	PREDICTED: uncharacterized protein LOC101248635
Refseq	XP_004249904.1	0.0	PREDICTED: uncharacterized protein LOC101248635
TrEMBL	K4D4K5	0.0	K4D4K5_SOLLC; Uncharacterized protein
STRING	Solyc11g005920.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6050	23	34
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09330.4	5e-83	NAC domain containing protein 82

Link Out ? help Back to Top
Phytozome	Solyc11g005920.1.1
Entrez Gene	101248635

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]